Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRGHVAEVNGGVAAMALWFLNFSTWDGVAGIYVEDLFVWPRFRRRGLARGLLSTLARECVDNRYTRLAWSVLNWNSDAIALYDRIGGQPQHE---WTIYRLSGPRLAALAAPR
2Q4V Chain:A ((71-168))
-----------VVGYGIYYFIYSTWKGRT-IYLEDIYVMPEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDWNQRAMDLYKALGAQDLTEAEGWHFFCFQGEATRKLA---
General information:
TITO was launched using:
RESULT:
Template:
2Q4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52783 for 536 contacts (-98.5/contact) +
2D Compatibility (PS) -10205 + (NN) -4812 + (LL) 320
1D Compatibility (HY) -13200 + (ID) 1450
Total energy: -82130.0 ( -153.23 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_2Q4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q4V-query.scw
PDB file :
Tito_Scwrl_2Q4V.pdb
: