Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAAPTLQTIRLAPKALLHDHLDGGLRPATVLDIAGQVGYDDLPATDVDALASWFRTQSHSGSLERYLEPFSHTV-AVMQTPEALYRVAFECAQDLAADSVVYAEVRFAPEL------------HISCGLSFDDVVDTVLTGFAAGEKACAADGQPITVRCLVTAMRHA-AMSREIAELAIRFRDKGVVGFDIAGAEAGHPPTR---HLDAFEYMRDHNARFTIHAGEAFGLPSIHEAIAFCGADRLGHGVRIVDDIDVDADGGFQLGRLAAILRDKRIPLELCPSSNVQTGAVASIAEHPFDLLARARFRVTVNTDNRLMSDTSMSLEMHRLVEAFGYGWSDLARFTVNAMKSAFIPFDQRLAIIDEVIKPRFAALMGHSE |
| 1NDY Chain:A ((9-348)) | -------------PKVELHVHLDGAIKPETILYYGKRRGIA-LPADTPEELQNII-GMDKPLTLPDFLAKFDYYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVSLVNQGLQEGERDFG-----VKVRSILCCMRHQPSWSSEVVELCKKYREQTVVAIDLAGDETIEGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDT-----------TLYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPEDEKKELLDLLYK----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NDY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215126 for 2799 contacts (-76.9/contact) +
2D Compatibility (PS) -34386 + (NN) -8184 + (LL) 2064
1D Compatibility (HY) -21200 + (ID) 5000
Total energy: -281832.0 ( -100.69 by residue)
QMean score : 0.441
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