Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDLITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPIGHPAAIALADDAPIITPINSEFGKANRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTNRYDYVTTKPLTAAQRAFRQVFEKPDFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAPMEIAG
3SWT Chain:A ((8-300))
---LITVKKLGSRIGAQVDGVSLGADLDAAAVDQIRAALLEHKVIFFRNQHHLDDQQQLQFAGLLGTPI------------------------ANRWHTDVTFAANYPAASILRAVTLPNYGGSTLWANTATAYAELPEPLKCLVENLWALHTNR----------------------PDFRTEHPVVRVHPETGERTLLAGDFVRGFVGLDSQESSALFELLQRRITSPENTIRWNWESGDVAIWDNRATQHRAIDDYDDQHRLLHRVTLMGDVPVDVHGQRSRVISGAPLAL--
General information:
TITO was launched using:
RESULT:
Template:
3SWT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119616 for 1994 contacts (-60.0/contact) +
2D Compatibility (PS) -26509 + (NN) -15053 + (LL) 3292
1D Compatibility (HY) -30000 + (ID) 10600
Total energy: -198486.0 ( -99.54 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3SWT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SWT-query.scw
PDB file :
Tito_Scwrl_3SWT.pdb
: