Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
4KMC Chain:A ((83-161))
----------------------------------------------------------------------------------TNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA-
General information:
TITO was launched using:
RESULT:
Template:
4KMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1320 for 432 contacts (-3.1/contact) +
2D Compatibility (PS) -8936 + (NN) -6913 + (LL) 6464
1D Compatibility (HY) -8800 + (ID) 3950
Total energy: -23455.0 ( -54.29 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_4KMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KMC-query.scw
PDB file :
Tito_Scwrl_4KMC.pdb
: