Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
1J3L Chain:A ((5-153))
-------TTDL-SDLYPEGEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLL
General information:
TITO was launched using:
RESULT:
Template:
1J3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103550 for 1298 contacts (-79.8/contact) +
2D Compatibility (PS) -17080 + (NN) -13756 + (LL) 812
1D Compatibility (HY) -16800 + (ID) 3450
Total energy: -153824.0 ( -118.51 by residue)
QMean score : 0.780
(partial model without unconserved sides chains):
PDB file :
Tito_1J3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3L-query.scw
PDB file :
Tito_Scwrl_1J3L.pdb
: