Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDP----AGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG
2OFI Chain:A ((3-179))
--RCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGCFCHPG---
General information:
TITO was launched using:
RESULT:
Template:
2OFI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90277 for 1317 contacts (-68.5/contact) +
2D Compatibility (PS) -19102 + (NN) -15049 + (LL) 184
1D Compatibility (HY) -18800 + (ID) 4700
Total energy: -147744.0 ( -112.18 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_2OFI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OFI-query.scw
PDB file :
Tito_Scwrl_2OFI.pdb
: