Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLP-IDAPILQMEVVRVDAEGVGLRFLSEA
1YWU Chain:A ((6-90))
-DERRRFHRIAFDADSEILQGE-RRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLY-LGLDVLIRMEISLAWARDGLLGFECQHID
General information:
TITO was launched using:
RESULT:
Template:
1YWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45230 for 522 contacts (-86.6/contact) +
2D Compatibility (PS) -8869 + (NN) -4100 + (LL) 264
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -60485.0 ( -115.87 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1YWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YWU-query.scw
PDB file :
Tito_Scwrl_1YWU.pdb
: