Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTSPNILFIMADQMAAPLLPLHDPRSVLRMPHLSRLAERAVVFDSAYCNSPLCAPSRFTLVSGRLPTRIG--AWDNAADFAA---DTPTYAHYLRNLGYRTALSGKMHF-CGPD-------QLHGYEERLTSDIYPADYGWAVNWDEPEVRPSW--YHNMSSVLQAGPCVRTNQLDFDEEVVFKARQYLYDHVRQHAGQPFCLTVSMTHPHDPYSIPASYWNLYRDEDIPLPRQRFAQEEQDPHSQRLLKVIDLWDKPLPEERIRAARRAYFGACSYVDAQIGALLATLEKCGLADDTIVVFSGDHGDMLGERGLWYKM--------------HWFEMAARVPLLVHAPARFAPRRIGAS-VSTVDLLPTLVELAGGQVDPRLPLEGRSLLPHLRDGSGHDE---VIG-EYTAEGTLSPLMMIRRGDYKFIYSEQD-PCLLYDLRNDPQERENLAASPAHRGTFEAFLDEARRRWDIPAITRAVLDSQRRRRLVAAALARGRLASWDHQPWVDASQQYMRNHIDLDDLERRARFPQP |
3ED4 Chain:A ((28-453)) | ----PNLVIIMADDLGYGDLATYG-HQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWIPSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDRTDQPQAQDMGFDYSLAN---TAGFVTDATLDNAKERPRYGMVYPTGWLRNGQPTPRADKMS-GEYVSSEVVNWLDN---KKDSKPFFLYVAFTEVHSPLASPKKYLDMYS-------QYMSAYQKQHPD----LFYGDWADKPW------RGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMVSDTPVYGLDWMPTLAKMMNFKLPTDRTFDGESLVPVLEQKALKREKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRNNKPKYLYNLKSDRYETLNLIGKKPDIEKQMYGKFLKYKTDIDNDSLMKARGDKPEAVTWG------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ED4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205521 for 3317 contacts (-62.0/contact) +
2D Compatibility (PS) -41599 + (NN) -20441 + (LL) 5412
1D Compatibility (HY) -25600 + (ID) 5850
Total energy: -293599.0 ( -88.51 by residue)
QMean score : 0.392
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