Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHCFANGNKRTAAAAATVFLLLNGIELTGPAQDFVDIMVALVTREASVQDLEDWMFYWHRPFDAYNLPDSDAFERMVARLGIG
3DD9 Chain:A ((66-118))
--YIFNDANKRTALNSALLFLRRNGVQVFD-SPELADLTVGAATGEISVSSVADTLRRLYGSA---------------------
General information:
TITO was launched using:
RESULT:
Template:
3DD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25413 for 286 contacts (-88.9/contact) +
2D Compatibility (PS) -5717 + (NN) -3021 + (LL) 1128
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -36323.0 ( -127.00 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3DD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DD9-query.scw
PDB file :
Tito_Scwrl_3DD9.pdb
: