Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQPSENRLITSARYALCLLTASGVLLSGCASSGVGSVAQTTRAEYYPSCYEPVSHLRSTDNAVRNSAITGAITGGLLGGLAGGLASDENRGRNAALAAAGGALAGGAAGYYMEKQKQISDDRARIGSYGTDVDRSTVEINRSVAYAKSAQSCYQSQFKALLDGRKNKSINEAEGRKRLAEIVSGLQETNALLVAANGRAGENISNYTQAY-EKDLQQVGVPRAEVTKVAEAENRASTTKGGSKPKTGSNPKVPKEAVATEQTIRKAQDAQSEGNKVASQGQGMIREVCNSPDMGDWAPPSCAKA |
4GPZ Chain:A ((172-243)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTG-IPIVYELDKNLKPIK-------------PMQFLGDEETVRKAM------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GPZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 33974 for 366 contacts (92.8/contact) +
2D Compatibility (PS) -7227 + (NN) 1780 + (LL) 10352
1D Compatibility (HY) 4000 + (ID) 100
Total energy: 42779.0 ( 116.88 by residue)
QMean score : -0.097
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