Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQSTLGGDLVEQDEFLLRPGEERRIERTLDEQTRQLGFVAAYRDLD--RATWRQVLDVPGQRTSHLDITLGAQAIGIVARPAP
4Y7O Chain:C ((30-127))
-------------------------------IRAREAINTSAAGIPLSVVVRIYQLKDNRSFDSADYQALFTG-------DIIAQKDVWLQPGGSVAVDMPLDDAAKFTGVAAMFLEPDQKKNTWRVVLGRDELEPDTPRLIEVSGNTLTLLPV--
General information:
TITO was launched using:
RESULT:
Template:
4Y7O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15862 for 539 contacts (-29.4/contact) +
2D Compatibility (PS) -8946 + (NN) -391 + (LL) 2760
1D Compatibility (HY) -7200 + (ID) 1550
Total energy: -31189.0 ( -57.86 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_4Y7O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y7O-query.scw
PDB file :
Tito_Scwrl_4Y7O.pdb
: