Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPI--EVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQP--YLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEVLAG
2IMF Chain:A ((3-184))
----VDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGIPLVF----PANYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIERKVFGVPTMFLGDEMWWGNDRLFMLESAMGR
General information:
TITO was launched using:
RESULT:
Template:
2IMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108345 for 1349 contacts (-80.3/contact) +
2D Compatibility (PS) -19331 + (NN) -8226 + (LL) 420
1D Compatibility (HY) -12400 + (ID) 3000
Total energy: -150882.0 ( -111.85 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_2IMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IMF-query.scw
PDB file :
Tito_Scwrl_2IMF.pdb
: