Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1PJQ Chain:A ((216-447))
-----------------GEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKR---HCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVT------G--ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVALRDKLNWFSNH----------------
General information:
TITO was launched using:
RESULT:
Template:
1PJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183496 for 1860 contacts (-98.7/contact) +
2D Compatibility (PS) -24715 + (NN) -13148 + (LL) 2148
1D Compatibility (HY) -28400 + (ID) 6650
Total energy: -254261.0 ( -136.70 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1PJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PJQ-query.scw
PDB file :
Tito_Scwrl_1PJQ.pdb
: