Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTLAPESTRQNLR-SQRLNLLTNEPHQRLESLVKSKEPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFPGLASRARDDAARADLADLGHPVPEGDQSV-READLSLAEALGWLFVSEGSKLGAAFLFKKAAALELDENFGARHLAEPEGGRAQGWKSFVAILDGIELNEEEERLAAKGASDAFNRFGDLLERTFA
1P3T Chain:A ((8-192))
-----------ALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPYEAG---NKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHLNALNLTPEAEAEAIQGAREAFAFYKVVLRETFG
General information:
TITO was launched using:
RESULT:
Template:
1P3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33428 for 1414 contacts (-23.6/contact) +
2D Compatibility (PS) -20019 + (NN) -12929 + (LL) 1036
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -82890.0 ( -58.62 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1P3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P3T-query.scw
PDB file :
Tito_Scwrl_1P3T.pdb
: