Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRFEIAFSGQLVAGARPEVVKANLAKLFQADAQRIELLFSGRRVVIKNNLDAASAEKYRSVLERAGAIAVVAEMEVEEVVMAPPPAQTTPVEAPQTRAATGTSAPAGRLQVAPRDGYMAAFAEVDAPDFGLAPVGADLQDAKAEAEAPKLDLSRFSVAPVGSDMGQARSEPAAPAPDTSHLRLQD
4JK2 Chain:C ((306-344))
--------TGELICAANMELSLDLLAKLSQSGHKRIETLFT-------NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK
General information:
TITO was launched using:
RESULT:
Template:
4JK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9012 for 149 contacts (-60.5/contact) +
2D Compatibility (PS) -4199 + (NN) -2019 + (LL) 1676
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -16804.0 ( -112.78 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_4JK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JK2-query.scw
PDB file :
Tito_Scwrl_4JK2.pdb
: