Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKKHTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEH------FIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITIDTLSEDPDLAVKRIISYLETNQPA
2OFX Chain:A ((31-201))
----------------------RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQI----HEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV
General information:
TITO was launched using:
RESULT:
Template:
2OFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102420 for 1406 contacts (-72.8/contact) +
2D Compatibility (PS) -18154 + (NN) -8505 + (LL) 1420
1D Compatibility (HY) -14000 + (ID) 4350
Total energy: -146009.0 ( -103.85 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_2OFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OFX-query.scw
PDB file :
Tito_Scwrl_2OFX.pdb
: