Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRAG
4QDA Chain:A ((2-140))
-SLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAASLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPL-----
General information:
TITO was launched using:
RESULT:
Template:
4QDA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94779 for 1056 contacts (-89.8/contact) +
2D Compatibility (PS) -14816 + (NN) -6029 + (LL) 252
1D Compatibility (HY) -19200 + (ID) 6900
Total energy: -141472.0 ( -133.97 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4QDA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QDA-query.scw
PDB file :
Tito_Scwrl_4QDA.pdb
: