Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPVLPLLLSLSLCAPALADWSGPIEQPLWSLPAAPGLSRWLIVHNLSSAAADGLYHVEVLERRQGQQPWQFQRLAAHLALTEQALRASIVAPLKRGGVYPESYQFAYRQWQERQAAGQAPVCRRTVDECLRAPD
4LNK Chain:A ((304-340))
--------------APCYVAWSAQNRSPLIRIPASRGISTRVEVRSVDPAANPYLALSVLLAAGLDGIKNKLEAPAPIDRNIYVMSKEERMENGIVDLPATLAEALEEFKSNEVMVKALGEHLFEHFIEAKEIEW
General information:
TITO was launched using:
RESULT:
Template:
4LNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9789 for 169 contacts (-57.9/contact) +
2D Compatibility (PS) -3890 + (NN) -2326 + (LL) 1276
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -17779.0 ( -105.20 by residue)
QMean score : -0.136
(partial model without unconserved sides chains):
PDB file :
Tito_4LNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNK-query.scw
PDB file :
Tito_Scwrl_4LNK.pdb
: