Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPFSERISRLKSSLIREILAAAQRPEVMSFAGGLPAEPMLPK-------VQ-WEQMPASMGQYGMSEGEPALREAIAA-EARALGVPCEASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDLVALRQRLER-----HKPAFAYLIPTFQNPSGVRYSEERRDAVAALLDEFGVTLIEDEPYRELVFDEGRATPLVSRLRKSSWIYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRVGQWQALQWFGSEAYRQHLAELREFYRVRRDAMQEALLEHFGELAEWNIPEGGLFFWLTLRQPLDTRTLLQPALAADVAFMPGEPFFAEPEQNLGRLRLNFSHVAPERLHEGLRRLAKVVRDAQAAEAA |
| 3ATH Chain:A ((54-448)) | --FSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGI-SQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVK-NTMRLNFTYVDEDKIMEGIKRLAETIKEELKA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ATH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203970 for 3318 contacts (-61.5/contact) +
2D Compatibility (PS) -42387 + (NN) -28887 + (LL) 496
1D Compatibility (HY) -35200 + (ID) 7150
Total energy: -317098.0 ( -95.57 by residue)
QMean score : 0.554
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