Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
2YJT Chain:A ((2-159))
-KYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLD---
General information:
TITO was launched using:
RESULT:
Template:
2YJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120982 for 1356 contacts (-89.2/contact) +
2D Compatibility (PS) -18064 + (NN) -13227 + (LL) 380
1D Compatibility (HY) -17600 + (ID) 4350
Total energy: -173843.0 ( -128.20 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2YJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJT-query.scw
PDB file :
Tito_Scwrl_2YJT.pdb
: