Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGP-LDDD
4ZJU Chain:A ((12-270))
-GLLAGKRFLIAGVASKLSIAYGIAQALHREGAELAFTYPNEKLKKRVDEFAEQFGSK--LVFPCDVAVDAEIDNAFAELAKHWDGVDGVVHSIGFAPAHTLDGDFTDVTDRDGFKIAHDISAYSFVAMARAAKPLLQARQGCLLTLTYQGSERVMPNYNVMGMAKASLEAGVRYLASSLGVDGIRVNAISAGPIRTLAASGIKSFRKMLDANEKVAPLKRNVTIEEVGNAALFLCSPWASGITGEILYVDAGFNTVGMSQS----
General information:
TITO was launched using:
RESULT:
Template:
4ZJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170851 for 2207 contacts (-77.4/contact) +
2D Compatibility (PS) -28535 + (NN) -14358 + (LL) 196
1D Compatibility (HY) -30000 + (ID) 9300
Total energy: -252848.0 ( -114.57 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4ZJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZJU-query.scw
PDB file :
Tito_Scwrl_4ZJU.pdb
: