Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
3VPJ Chain:A ((3-148))
--SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASC------
General information:
TITO was launched using:
RESULT:
Template:
3VPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92849 for 1254 contacts (-74.0/contact) +
2D Compatibility (PS) -15797 + (NN) -4289 + (LL) 356
1D Compatibility (HY) -20000 + (ID) 7300
Total energy: -139879.0 ( -111.55 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3VPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VPJ-query.scw
PDB file :
Tito_Scwrl_3VPJ.pdb
: