Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSE---SIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
4LGW Chain:A ((10-240))
----RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIV--MTPEMN--FSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLIL
General information:
TITO was launched using:
RESULT:
Template:
4LGW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141083 for 1747 contacts (-80.8/contact) +
2D Compatibility (PS) -24594 + (NN) -12936 + (LL) 532
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -195931.0 ( -112.15 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_4LGW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LGW-query.scw
PDB file :
Tito_Scwrl_4LGW.pdb
: