Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQ-RCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPCDARH-MASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLEI
3KNW Chain:A ((16-201))
--------RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTE-TSARDKLMNYLQCWVKD--------ESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALESTKMMLD-
General information:
TITO was launched using:
RESULT:
Template:
3KNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90843 for 1239 contacts (-73.3/contact) +
2D Compatibility (PS) -19055 + (NN) -8719 + (LL) 444
1D Compatibility (HY) -20800 + (ID) 4050
Total energy: -143023.0 ( -115.43 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3KNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KNW-query.scw
PDB file :
Tito_Scwrl_3KNW.pdb
: