Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQGSLMLDIGGTWLTAEDRQILRHPEVGGLIIFARNIEHPAQVRELCAAIRAI-RPDLLLAVDQEGGRVQRLRQGFVRLPAMRAIADNPNAEE---LAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARL--AGQLDALMPAHVIYPQVDPQPAGFSRRWLQEILRGELKFDGVIFSDDLSMAGAHVVGDAASRIEAALAAGCDMGLVCNDRASAELALAALQRLKVTPPSRLQRMRGKG-YANTDYRQQPRWLEALSALRAAQLID |
4GVH Chain:A ((2-327)) | --GPVMLNVEGCELDAEEREILAHPLVGGLILFTRNYHDPEQLRELVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFFALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHI-SAAIGERSYHADPAKALAMATRFIDGMHDAGMKTTGKHFPGHGAVTADSHKETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAIDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERAQASLDAGCDMILVCNNRKG---AVSVLDNLSPIKAERVTRLYHKGSFSRRELMDSARWKTASAQL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187615 for 2906 contacts (-64.6/contact) +
2D Compatibility (PS) -35137 + (NN) -21421 + (LL) 1664
1D Compatibility (HY) -27200 + (ID) 8300
Total energy: -278009.0 ( -95.67 by residue)
QMean score : 0.519
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