Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVFLAIGALLPICLAGGALLGYAAVRFRVQGDPVAEQVNALLPQTQCGQCGYPGCKPYAEAIAAGDKINKCPPGGEATIRALADLLDLEPEPLDAAEETPPRVAYIREAECIGCTKCIQACP---VDAIVGAARLMHTVIADECTGCDLCLEPCP-VDCIEMREIPDDVRHWKWPQPSPRLIASDRERAA
1GT8 Chain:A ((945-1004))
--------------------------------------------------------------------------------------------------------VAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRM----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49684 for 361 contacts (-137.6/contact) +
2D Compatibility (PS) -5622 + (NN) 1031 + (LL) 7208
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -55567.0 ( -153.93 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1GT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GT8-query.scw
PDB file :
Tito_Scwrl_1GT8.pdb
: