Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPVLPEQAQEALDAFGHTASWEQRARLLLQWGERLAPLAEHERQEEHRVHGCESLVWL-LGEQRDGHWRFRADSDARLIRGLLAVLLARVDGIETRELARLDLNDWFTCLGLSRQLSPSRSNGLNAVLQRMRELAGQTAG
4LW4 Chain:C ((25-150))
-------------NTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAAAKQV--
General information:
TITO was launched using:
RESULT:
Template:
4LW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76047 for 936 contacts (-81.2/contact) +
2D Compatibility (PS) -13850 + (NN) -9261 + (LL) 1100
1D Compatibility (HY) -9600 + (ID) 2350
Total energy: -110008.0 ( -117.53 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4LW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LW4-query.scw
PDB file :
Tito_Scwrl_4LW4.pdb
: