Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQ-DPEFLLQQMQLREELEELQDSADLAGVATFKRRLKAAQAELEREFAACW--DDAQRREEAERLVRRMQFLDKLAQEVRQLEERLDD
3BVO Chain:A ((45-201))
-----YFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESI---VKAKQKEFTDNVSSAFEQDDF---EEAKEILTKMRYFSNIEEKIK--------
General information:
TITO was launched using:
RESULT:
Template:
3BVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54067 for 981 contacts (-55.1/contact) +
2D Compatibility (PS) -17859 + (NN) -20161 + (LL) 1228
1D Compatibility (HY) -13600 + (ID) 2400
Total energy: -106859.0 ( -108.93 by residue)
QMean score : 0.760
(partial model without unconserved sides chains):
PDB file :
Tito_3BVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BVO-query.scw
PDB file :
Tito_Scwrl_3BVO.pdb
: