Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFERVREDIQSVFHRDPAARNALEVLTCYPGLHAVWLHRLAHGLWTSGWKWLARLVSNFGRWMTGIEIHPGARIGRRFFIDHGMGIVIGETAEIGDDVTLYQGVTLGGTTWNKGKRHPTLGNNVVVGAGAKVLGPFTVGEGAKVGSNAVVTKEVPPGATVVGIPGRIIMREDSEQQAKRQAMAEKLGFDAYGVSQDMPDPVARAIGQLLDHLQAVDGRLEGMCQALTALGSDYCAKDLPVLREEDFAGVKDEDGNPAA
4HZC Chain:A ((91-254))
----LRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPARII------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HZC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125038 for 1334 contacts (-93.7/contact) +
2D Compatibility (PS) -17549 + (NN) -5614 + (LL) 6040
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -160161.0 ( -120.06 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_4HZC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZC-query.scw
PDB file :
Tito_Scwrl_4HZC.pdb
: