Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFT--RLEGQGDA-TANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1N5B Chain:A ((4-118))
----FEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNNEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNNLDNNSLYTQLEMLVQGAERLQ
General information:
TITO was launched using:
RESULT:
Template:
1N5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60319 for 719 contacts (-83.9/contact) +
2D Compatibility (PS) -12433 + (NN) -8087 + (LL) 164
1D Compatibility (HY) -11600 + (ID) 2550
Total energy: -94825.0 ( -131.88 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1N5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5B-query.scw
PDB file :
Tito_Scwrl_1N5B.pdb
: