Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVSRLLSLALLGAALHWAPAQAEEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLESDPNWK
1GPQ Chain:A ((16-91))
---------------------------------------KAAFNQMVQGHK-LPAWVMKG-GTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQ------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14319 for 432 contacts (-33.1/contact) +
2D Compatibility (PS) -8316 + (NN) -6188 + (LL) 5292
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -29831.0 ( -69.05 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_1GPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPQ-query.scw
PDB file :
Tito_Scwrl_1GPQ.pdb
: