Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSI------DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKY---HGIEACDLARALWRLALE-EGKGVRFVESDELRKLGK
2BKA Chain:A ((19-235))
-----KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAE-GFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGK
General information:
TITO was launched using:
RESULT:
Template:
2BKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102873 for 1590 contacts (-64.7/contact) +
2D Compatibility (PS) -22756 + (NN) -10695 + (LL) 240
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -153434.0 ( -96.50 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_2BKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKA-query.scw
PDB file :
Tito_Scwrl_2BKA.pdb
: