Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALQPSRSYRITGYSPAISNGYRQRLFSMGLLPGAALRVVRIAPLGDPIQVETRQTSLALRRKDLALLTLVPLD
2GCX Chain:A ((5-70))
-----PDSAWKITGFSRDISPAYRQKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKDLALIEL----
General information:
TITO was launched using:
RESULT:
Template:
2GCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41838 for 403 contacts (-103.8/contact) +
2D Compatibility (PS) -6752 + (NN) 605 + (LL) 772
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -58313.0 ( -144.70 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_2GCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GCX-query.scw
PDB file :
Tito_Scwrl_2GCX.pdb
: