Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFVNTLPLIFGLTAALGSSMALALPS-DR--------EQPIRVQADSAELDDKQGVAVYRGDVVVTQGSTKLTGNTVTLKQDKNGDIEVVTSVGKPAYYEQKPAPDKDVTKAYGLTIQYFVTQNRVVLIDQAKVIQEGNTFEGEKIVYDTQRQIVNAGRATGSQVTSPRPRIDMVIQPKKKAQ
4Q35 Chain:A ((25-93))
--------------ADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAK-GDYPDDAVFTGSVDIMQGNSRLQADEVQLHQ------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4Q35.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6366 for 287 contacts (-22.2/contact) +
2D Compatibility (PS) -6609 + (NN) -2747 + (LL) 7908
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -13364.0 ( -46.56 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4Q35.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q35-query.scw
PDB file :
Tito_Scwrl_4Q35.pdb
: