Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAK--DGFVATDGWAEVSEV-QVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
4AXK Chain:A ((5-238))
--ILPAVDVVNGQAVRLDQ-------SYGT-PLESALRWQEQGAEWLHFVDLDAAF-NRGSNHELMAEITRQL-DIKVELTGGIRDDASLERALATGATRVNIGTAALEKPEWIADVIRRHGEKIAVDIAVRLENGEWRTKGN----DGGDLWEVLERLDSQGCSRFVVTDVSKDGTLTGPNVDLLRDVAAATDAPIVASGGISTLEDVLGLAKYQDEGIDSVIIGKALYEHRFTLAEA---------
General information:
TITO was launched using:
RESULT:
Template:
4AXK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180919 for 1825 contacts (-99.1/contact) +
2D Compatibility (PS) -24206 + (NN) -11028 + (LL) 1800
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -233103.0 ( -127.73 by residue)
QMean score : 0.717
(partial model without unconserved sides chains):
PDB file :
Tito_4AXK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AXK-query.scw
PDB file :
Tito_Scwrl_4AXK.pdb
: