Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MWYNNSAGPFLLTGFLGSEAVHYRISMSFFVIYFSVLFGNGTLLVLIWNDHSLHEPMYYFLAMLADTDLGMTFTTMPTVLGVLLLDQREIAHAACFTQS-FIHSLAIVESGILLVLAYDCFIAIRTPLRYNCILTNSRVMNIGLGVLMRGFMSILPIILSLYCYPYCGSRALLHTFCLHQDVIKLACADI--TFNHIYPIIQTSLTVFLDALIIIFSYILILKTVMGIAS------------------------------------------------------------------------------------------------------------------------------------------------------------------GQEEAKSLNTCVSHISCVLVFHITVMGLSFIHRFGKH--APHVVPITMSYVHFLFPPFVNPIIYSIKTKQIQRSIIRLFSGQSRA |
3EML Chain:A ((20-469)) | --------------------GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ-------SQGCGEGQVA---CLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3EML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -278905 for 2082 contacts (-134.0/contact) +
2D Compatibility (PS) -27198 + (NN) -133 + (LL) 1756
1D Compatibility (HY) -18000 + (ID) 2500
Total energy: -324980.0 ( -156.09 by residue)
QMean score : 0.240
|
|
|