Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEQKDKYRPCVGIMLFNKQGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAKNKDWIYYNLPEEVIPTCW-NGRYSGQKQRWFLMKFYGEGKDININYTDHPEFKEWRWQSVDNLVAGAIPFKKEVYKTVIEEFSSQIKVSIIK
1VC9 Chain:A ((5-85))
-----------AGGVVFNAKREVLLLR--DRMGFWVFPKGHPEPGESLEEAAVREVWEQTGV-RAEVL----------LP--LYPTRYVNPKGVEREVHWFLMR--GEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL------------
General information:
TITO was launched using:
RESULT:
Template:
1VC9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34453 for 536 contacts (-64.3/contact) +
2D Compatibility (PS) -8680 + (NN) -2770 + (LL) 2264
1D Compatibility (HY) -6800 + (ID) 1550
Total energy: -51989.0 ( -96.99 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1VC9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VC9-query.scw
PDB file :
Tito_Scwrl_1VC9.pdb
: