Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKDADVAIDFSNP--NLLFPLLDEEFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLDDF-DIELTEAHHNKKVDAPSGTLEKLYDVIV-SLKENV--TPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL
1ARZ Chain:C ((72-262))
--------------------------------------------------DFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLF-----
General information:
TITO was launched using:
RESULT:
Template:
1ARZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69880 for 1358 contacts (-51.5/contact) +
2D Compatibility (PS) -19639 + (NN) -10231 + (LL) 4324
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -110176.0 ( -81.13 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1ARZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ARZ-query.scw
PDB file :
Tito_Scwrl_1ARZ.pdb
: