Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGT------VVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNGQLEIVTTPNQDNPLTE------GKTPILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK
2CDY Chain:C ((21-231))
LAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQ--NGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
2CDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75438 for 1560 contacts (-48.4/contact) +
2D Compatibility (PS) -20609 + (NN) -7094 + (LL) 208
1D Compatibility (HY) -22400 + (ID) 5550
Total energy: -130883.0 ( -83.90 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2CDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDY-query.scw
PDB file :
Tito_Scwrl_2CDY.pdb
: