Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGRQAFEFGLRPKDQFKVMQHFDLNTNHLEVLNRLYTPLIGTQAVGLYHFMTQFVKDSHNETLILSHYIFMNELKINLLEFRQQMDLLEAIGLLKAFVKHDEQETQFVYQLIQPPSAHLFFNDPMLSIFLYSEVEHRRFHELKKYFEYQQIDLSEFKQVTRQFTDVFKVPSTKIDIDTSDIPINEPYQGIDLSNESF-DFEMLRQMLGKH---FISQDIVTKDAKRLITQLATLYGLTADGMKHVILNSITSGQQLSFEEMRKQARSYYLMEHENQMPKLQVKSPATSSSTGKSSEVNPKPQSDEWFELLEQTSPIDMLASWSESEPTISQKTMVEELIEREKMSFGVINILLQFVMLKEDMKLPKAYILEIASNWKKKGIKTAKEAYNYAKKVNQPKNEGSSGNYQKRGSYYGQRNRISKEKTPKWLENRDKPSEEDSAKDNSVDDQQLEQDRQAFLDKLSKKWEEDSR |
| 3VH3 Chain:A ((4-323)) | MLKIADQSVDLNLKLMKWRILPDLNLDIIK----------------------------NTKVLLLGAGTLGCYVSRALIAWG-----VRKITFVD--------------------NGTVSYSNP----------------VRQALYNFEDCGKPKAELAAASLKRIFP----LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD--SRESRWLPSLLSNIENKTVINAALG-FDSYLVMRHGNRDEQSSKQLGCYFCH----------DVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDI---PHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALE----------------------------------HPLYLEEISG------------------------LSVIKQEVER--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VH3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16202 for 2557 contacts (6.3/contact) +
2D Compatibility (PS) -33016 + (NN) -6870 + (LL) 10124
1D Compatibility (HY) -12800 + (ID) 2100
Total energy: -28460.0 ( -11.13 by residue)
QMean score : 0.234
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