Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLSTVIIILILEIVFHNMNYVNAQPDPKLDELNKVSDYKNNKGTMGNVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIPKSEPDINQNFGGCCMYGGLTFNSSEN-ERDKLITVQVTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNTSFWFDLFPKKELVPFVPYKFLNIYGDNKVVDSKSIKMEVFLNTH
1L0Y Chain:B ((1-220))
-------------------------QQDPDPSQLHRSSLVKN----LQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLSENAE------RSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPE---FTQSKYLMIYKDNETLDSNTSQIEVYLTT-
General information:
TITO was launched using:
RESULT:
Template:
1L0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83050 for 1716 contacts (-48.4/contact) +
2D Compatibility (PS) -23722 + (NN) -11565 + (LL) 3324
1D Compatibility (HY) -21200 + (ID) 5150
Total energy: -141363.0 ( -82.38 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1L0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L0Y-query.scw
PDB file :
Tito_Scwrl_1L0Y.pdb
: