Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRIRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGH-------SIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKD-IKKALKTVKIKESSK
2F6U Chain:A ((4-233))
-MRWRKWRHITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVIYEKGIDAFLETL-------
General information:
TITO was launched using:
RESULT:
Template:
2F6U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161629 for 1819 contacts (-88.9/contact) +
2D Compatibility (PS) -24292 + (NN) -11758 + (LL) 652
1D Compatibility (HY) -20000 + (ID) 4650
Total energy: -221677.0 ( -121.87 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_2F6U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F6U-query.scw
PDB file :
Tito_Scwrl_2F6U.pdb
: