Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKRSQNSPYVTPDNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLE-----HLFMDYKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDKMYAT-AKGKSKKEAEQQCAYQALQKLKEAK
1YYO Chain:B ((7-220))
--------------------LEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR------IKRGKINETIIGDVFKALWAAVYIDSG--RDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKE--YRTLGEGKSKKEAEQRAAEELIKLLEES-
General information:
TITO was launched using:
RESULT:
Template:
1YYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89543 for 1506 contacts (-59.5/contact) +
2D Compatibility (PS) -22616 + (NN) -7314 + (LL) 1392
1D Compatibility (HY) -16000 + (ID) 4300
Total energy: -138381.0 ( -91.89 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1YYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YYO-query.scw
PDB file :
Tito_Scwrl_1YYO.pdb
: