Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTLGLSSLGGTLEFYDFIIFVFFTSIIAKHFFPNTLSPIWSEINTYGIFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVIPTFALALMPTFNDLVGFGVDSMGLTPKNAHYLGYIAPVFLVLVRICQGVAVGGELPGAWVFVHEHAPQGQKNTYIGFLTASVVSGILLGSLVYIGIYMVFDKPVVEDWAWRVAFGLGGIFGIISVYLRRFLEETPVFQQMKQDDALVKFPLKEVFKNSLFGISISMLITWVLTACILIFILFVPNFTLTHPNFHFTPFEKTYFQILGLVGIVSSIIFTGFLADKIKPHKVCMAFSAAFGFFGFLFFKEFYSNAPSLVNTIILYFLACFCAGIMNFCPIFMSDVFSARIRFSGISFAYNIAYAITAGFTPQLSSWLNAKAIAVPESLQSYGLSFYILIVSLIAFITSLLMAPIYHKSNTQHEVSPTA |
3WDO Chain:A ((18-160)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VFSLRMLGMFMVLPVLTTYGMAL--QGASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAA-L--S--DSIWGIILGRALQGS-GAIAAAVMALLSDLTREQNRTKAMAFI-GVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136067 for 1028 contacts (-132.4/contact) +
2D Compatibility (PS) -13868 + (NN) 2573 + (LL) 19040
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -134522.0 ( -130.86 by residue)
QMean score : 0.180
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