Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLETYALKSGAVFISDAHFLPKSPHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLPLDKEQQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHGDLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPFLKKRIYQKPVRLWELEPKELKAFIEKRLKAYQNYIKDLNIDSIDGIIEGHFHLKSGTKIHSSVPIYCPLPSFYY------EQSLFKVSSSLLEPSQNKDA
3CK2 Chain:A ((3-151))
----AMAKQTIIVMSDSHGDSLI--VEEVRDRYV-GKVDAVFHNGDSELRPDS---------P----L-----WEGIRVVKGNMDFYAGY--P----------ERLVTELGSTKIIQTHGHLFDINFN----------------------------------------------F----QKLDYWAQEE----------EAAICLYGHLHVPSAWLEG--KILFLNPGSISQPRGTIRECLYARVEIDDSYFKVDFLT
General information:
TITO was launched using:
RESULT:
Template:
3CK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121372 for 1167 contacts (-104.0/contact) +
2D Compatibility (PS) -14890 + (NN) -1899 + (LL) 8888
1D Compatibility (HY) -1200 + (ID) 1200
Total energy: -131673.0 ( -112.83 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_3CK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CK2-query.scw
PDB file :
Tito_Scwrl_3CK2.pdb
: