Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFE---G-VFFAIGAHPYDVESFD---EGLFEKFVSHQKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYP-KA-FGVLHCFNAD-SMLLELSDR-FYYGIGGVSTFKN-AKRLVEILPKIPKNRLLLETDSPYLTPHPFRG----TRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
3RCM Chain:A ((2-265))
QLIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFS------PRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVALHRGESAEHTAAHTTATARDFFQLP
General information:
TITO was launched using:
RESULT:
Template:
3RCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160974 for 2189 contacts (-73.5/contact) +
2D Compatibility (PS) -26655 + (NN) -16165 + (LL) 376
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -222218.0 ( -101.52 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_3RCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCM-query.scw
PDB file :
Tito_Scwrl_3RCM.pdb
: