Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -MKKSERLNDMMLFLNDKNVFQLSDIMTKYDISRSTAIRDVKSLEEIGMPIYSERGRNGHYQVLRNRLLSPIVFNIDEVFA-LYFSMLTLKAYETTPFHLSVEK--LKTKFERC-------LSAEKIEMLRKTEEVFSLGYI----KHNNQCEF-----LDVILQFTMEEKVCQINYDKKGIEKTYV-VQFYNI-----SSAYGQWYVTSYNFETKRMQVFRCDRILELEENHAFEAKKLTDLKSETDYLYKKKDAINFEVEIASNGVDLFFKENYPSMKLNQEQGRNVIRGFYNRGEEPFIINYLLGFGDKINMVQPDSLKEMLLNELKSLQNHLQKLS------------------------------------------------- |
4O5J Chain:A ((27-400)) | LKNLNEKYEQLSQYLNQVASLKQSIQNAN---NIELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITS--VLGFWSLYAGNYFTFFVGKKVDSGQPASVQGNPPFKTIIENCSGIENCAMDQTTYDKMKKLAEDLQAAQTNSATKGNNLCALSGCAATSNPPNSTVSNALNLAQQLMDLIANTKTAMMWKNIVISGVSNTSGA--ITSTNYPTQYAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQT------------NPKFAKDIYTFAQNQKQVISYAQDIFNLFNSIPAEQYKYLEKAYLKIPNAGSTPTNPYRQVVNLNQEVQTIKNNVSYYGNRVDAALSVARDVYNLKSNQAEIVTAYNDAKTLSEEISKLPH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O5J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18956 for 2174 contacts (-8.7/contact) +
2D Compatibility (PS) -30370 + (NN) -1534 + (LL) 1448
1D Compatibility (HY) -2000 + (ID) 2150
Total energy: -53562.0 ( -24.64 by residue)
QMean score : 0.234
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