Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKDDSLTLHTDLYQINMMQVYFNKGIHNKRAVFEAYFRKVPFENGYAVFAGLERIVRYLENLSFSDSDLSYLEELGYPEEFLDYLKNLKMELTV-KSAKEGDLVFANEPLVQIEGPLAQCQLVETAILNIINYQTLVATKAARIRSVIEDEPLLEFGTRRAQEMDAAIWGTRAAIIGGANATSNVRAGKIFNIPVSGTHAHALVQTYGDDYQAFKAYAETHKD--CVFLVDTYDTLRVGVPNAIRVAKEMGEKINFLGVRLDSGDLAYLSKKVRQQLDDAGFPNAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVSIETDAGSMRDTIKLSNNAEKVSTPGKKQVWRITSRAKGKSEGDYITFADTDVTQLDEIEMFHPTYTYINKTVRDFDAVPLLVDIFDKGKLVYQLPSLQEIQEYGRKEFDQLWDEYKRVLNPQDYPVDLARDVWQNKMDLIDRIRKEALAKGEVR |
| 3GNN Chain:A ((35-297)) | ------DALAEDVGSG-----LVPD---GAPRRARVIVRED------AVLCGVPWFDAVVRAVD--------------------------PSIEVDWRHREGDRMSADSTVCELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLR-LAQKYAVRVGGG---AN----Q-------------------GVGEALDAAFALN--VPVQIEVETLDQL-------RTALA-----HGARSVLLDNFTLDMM-RDAVRVTE----GRAVLEVSGGVNFDTVRAIAETG--VDRISIGALTKDV---RATDYSMRIV----------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141011 for 1856 contacts (-76.0/contact) +
2D Compatibility (PS) -25401 + (NN) -7937 + (LL) 15324
1D Compatibility (HY) -4400 + (ID) 2200
Total energy: -165625.0 ( -89.24 by residue)
QMean score : 0.478
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