Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIGLFCAAGFSTG-MLVNNMKIAADKEGI-EAHIEAYSQGKIADYAKDLDVALLGPQVSYTLDKSKSICDEYGVPIAVIPMADYGMLDGVKVLKLALSLLETRKEA
1VKR Chain:A ((378-471))
-RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP---PDVDLVITHRDLTERAM---RQVP--QAQHISLTNFL-DSGLYTSLTERLVAAQRH----
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83087 for 663 contacts (-125.3/contact) +
2D Compatibility (PS) -9994 + (NN) -5132 + (LL) 1168
1D Compatibility (HY) 1600 + (ID) 450
Total energy: -95895.0 ( -144.64 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: