Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGIDGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQG-PIFSIGGDLKVMKAAVESDDISSLTKIAELVNQISYDLLQLEKPVVMCVDGAVAGAAANIALAADFVIASKK-SKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQ--Y-KKLE-LQLQESLAFKQDFKEGVRAHADRRRPNFLGK
2PPY Chain:A ((7-264))
-KKQYLTVFKEDGIAEIHLHINK-SNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSA--DP--RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLAIMN----GKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGI
General information:
TITO was launched using:
RESULT:
Template:
2PPY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138348 for 2053 contacts (-67.4/contact) +
2D Compatibility (PS) -27999 + (NN) -12274 + (LL) 1320
1D Compatibility (HY) -10000 + (ID) 2800
Total energy: -190101.0 ( -92.60 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2PPY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PPY-query.scw
PDB file :
Tito_Scwrl_2PPY.pdb
: